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toolbox for sca analysis  (MathWorks Inc)


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    Structured Review

    MathWorks Inc toolbox for sca analysis
    a) Crystal structure of PDZ3 bound to a peptide ligand (Doyle et al., 1996) (PDB ID 1be9), including the annotation of secondary structure followed in this article. b) Calculated <t>SCA</t> sector for PDZ domains (Suel, Lockless, Wall <t>&</t> <t>Ranganathan,</t> 2003); and c) Observed mutationally sensitive residues (MSR) of PDZ3 (McLaughlin et al., 2012).
    Toolbox For Sca Analysis, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/toolbox for sca analysis/product/MathWorks Inc
    Average 90 stars, based on 1 article reviews
    toolbox for sca analysis - by Bioz Stars, 2026-05
    90/100 stars

    Images

    1) Product Images from "Spectral analysis of Molecular Dynamics simulations on PDZ: MD Sectors"

    Article Title: Spectral analysis of Molecular Dynamics simulations on PDZ: MD Sectors

    Journal: Journal of biomolecular structure & dynamics

    doi: 10.1080/07391102.2019.1588169

    a) Crystal structure of PDZ3 bound to a peptide ligand (Doyle et al., 1996) (PDB ID 1be9), including the annotation of secondary structure followed in this article. b) Calculated SCA sector for PDZ domains (Suel, Lockless, Wall & Ranganathan, 2003); and c) Observed mutationally sensitive residues (MSR) of PDZ3 (McLaughlin et al., 2012).
    Figure Legend Snippet: a) Crystal structure of PDZ3 bound to a peptide ligand (Doyle et al., 1996) (PDB ID 1be9), including the annotation of secondary structure followed in this article. b) Calculated SCA sector for PDZ domains (Suel, Lockless, Wall & Ranganathan, 2003); and c) Observed mutationally sensitive residues (MSR) of PDZ3 (McLaughlin et al., 2012).

    Techniques Used:



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    toolbox for sca analysis  (MathWorks Inc)
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    MathWorks Inc toolbox for sca analysis
    a) Crystal structure of PDZ3 bound to a peptide ligand (Doyle et al., 1996) (PDB ID 1be9), including the annotation of secondary structure followed in this article. b) Calculated <t>SCA</t> sector for PDZ domains (Suel, Lockless, Wall <t>&</t> <t>Ranganathan,</t> 2003); and c) Observed mutationally sensitive residues (MSR) of PDZ3 (McLaughlin et al., 2012).
    Toolbox For Sca Analysis, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/toolbox for sca analysis/product/MathWorks Inc
    Average 90 stars, based on 1 article reviews
    toolbox for sca analysis - by Bioz Stars, 2026-05
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    a) Crystal structure of PDZ3 bound to a peptide ligand (Doyle et al., 1996) (PDB ID 1be9), including the annotation of secondary structure followed in this article. b) Calculated SCA sector for PDZ domains (Suel, Lockless, Wall & Ranganathan, 2003); and c) Observed mutationally sensitive residues (MSR) of PDZ3 (McLaughlin et al., 2012).

    Journal: Journal of biomolecular structure & dynamics

    Article Title: Spectral analysis of Molecular Dynamics simulations on PDZ: MD Sectors

    doi: 10.1080/07391102.2019.1588169

    Figure Lengend Snippet: a) Crystal structure of PDZ3 bound to a peptide ligand (Doyle et al., 1996) (PDB ID 1be9), including the annotation of secondary structure followed in this article. b) Calculated SCA sector for PDZ domains (Suel, Lockless, Wall & Ranganathan, 2003); and c) Observed mutationally sensitive residues (MSR) of PDZ3 (McLaughlin et al., 2012).

    Article Snippet: Spectral analysis was applied using the protocol of Ranganathan et. al as implemented in the MATLAB toolbox for SCA analysis, with the covariance of motional or energetic fluctuations in place of the evolutionary covariance matrix.

    Techniques: